Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs6755030 chr2:24318343 C/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs6757526 chr2:176198759 A/G 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs67575381 chr14:74575052 A/T 5.67E-7 175 25.4 27.43 7.4 KM Plot
PCPG rs6757912 chr2:242511547 T/C 3.49E-5 173 25.92 25.6 20.2 KM Plot
PCPG rs6758284 chr2:118550610 C/T 1.85E-5 176 24.85 30.63 11.65 KM Plot
PCPG rs6758789 chr2:242547375 A/C 4.87E-11 177 25.87 24.7 10.3 KM Plot
PCPG rs67596067 chr17:50333733 G/A 0.00028 170 26.12 28.38 16.33 KM Plot
PCPG rs67602711 chr14:74400175 T/G 1.03E-5 177 25.4 28.38 10.43 KM Plot
PCPG rs67678658 chr21:38447606 C/T 5.33E-6 176 25 25.87 3.7 KM Plot
PCPG rs67745756 chr2:241539683 T/C 3.78E-5 177 25.97 20.2 10.3 KM Plot
PCPG rs67771048 chr17:2094807 G/A 0.000381 176 25.87 18 25.62 KM Plot
PCPG rs6780379 chr3:80560525 A/G 0.000294 178 19.87 23.43 27.95 KM Plot
PCPG rs67816129 chr8:135496810 A/T 0.000111 177 25.53 25.17 21.35 KM Plot
PCPG rs67816797 chr16:1757001 T/C 0 176 25.53 18.75 2.93 KM Plot
PCPG rs6789243 chr3:80581093 C/T 6.99E-5 176 19.53 24.53 27.2 KM Plot